References: Polyomaviridae
Abend, J. R., Joseph, A. E., Das, D., Campbell-Cecen, D. B. & Imperiale, M. J. (2009). A truncated T antigen expressed from an alternatively spliced BK virus early mRNA. J Gen Virol 90, 1238-1245. [PubMed]
Bauman, Y., Nachmani, D., Vitenshtein, A., Tsukerman, P., Drayman, N., Stern-Ginossar, N., Lankry, D., Gruda, R. & Mandelboim, O. (2011). An identical miRNA of the human JC and BK polyoma viruses targets the stress-induced ligand ULBP3 to escape immune elimination. Cell Host Microbe 9, 93-102. [PubMed]
Bennett, M. D., Woolford, L., Stevens, H., Van Ranst, M., Oldfield, T., Slaven, M., O'Hara, A. J., Warren, K. S. & Nicholls, P. K. (2008). Genomic characterization of a novel virus found in papillomatous lesions from a southern brown bandicoot (Isoodon obesulus) in Western Australia. Virology 376, 173-182. [PubMed]
Berke, Z. & Dalianis, T. (1993). Persistence of polyomavirus in mice infected as adults differs from that observed in mice infected as newborns. J Virol 67, 4369-4371. [PubMed]
Berke, Z., Mellin, H., Heidari, S., Wen, T., Berglof, A., Klein, G. & Dalianis, T. (1998). Adult X-linked immunodeficiency (XID) mice, IGM-/- single knockout and IGM-/- CD8-/- double knockout mice do not clear polyomavirus infection. In Vivo 12, 143-148. [PubMed]
Berke, Z., Wen, T., Klein, G. & Dalianis, T. (1996). Polyoma tumor development in neonatally polyoma-virus-infected CD4-/- and CD8-/- single knockout and CD4-/-8-/- double knockout mice. Int J Cancer 67, 405-408. [PubMed]
Bofill-Mas, S., Rusinol, M., Fernandez-Cassi, X., Carratala, A., Hundesa, A. & Girones, R. (2013). Quantification of human and animal viruses to differentiate the origin of the fecal contamination present in environmental samples. Biomed Res Int 2013, 192089. [PubMed]
Buck, C. B., Van Doorslaer, K., Peretti, A., Geoghegan, E. M., Tisza, M. J., An, P., Katz, J. P., Pipas, J. M., McBride, A. A., Camus, A. C., McDermott, A. J., Dill, J. A., Delwart, E., Ng, T. F., Farkas, K., Austin, C., Kraberger, S., Davison, W., Pastrana, D. V. & Varsani, A. (2016). The ancient evolutionary history of polyomaviruses. PLoS Path 12, e1005574. [PubMed]
Calvignac-Spencer, S., Feltkamp, M. C., Daugherty, M. D., Moens, U., Ramqvist, T., Johne, R. & Ehlers, B. (2016). A taxonomy update for the family Polyomaviridae. Arch Virol 161, 1739-1750. [PubMed]
Carter, J. J., Daugherty, M. D., Qi, X., Bheda-Malge, A., Wipf, G. C., Robinson, K., Roman, A., Malik, H. S. & Galloway, D. A. (2013). Identification of an overprinting gene in Merkel cell polyomavirus provides evolutionary insight into the birth of viral genes. Proc Natl Acad Sci USA 110, 12744-12749. [PubMed]
Carter, J. J., Paulson, K. G., Wipf, G. C., Miranda, D., Madeleine, M. M., Johnson, L. G., Lemos, B. D., Lee, S., Warcola, A. H., Iyer, J. G., Nghiem, P. & Galloway, D. A. (2009). Association of Merkel cell polyomavirus-specific antibodies with Merkel cell carcinoma. J Natl Cancer Inst 101, 1510-1522. [PubMed]
Chen, C. J., Cox, J. E., Azarm, K. D., Wylie, K. N., Woolard, K. D., Pesavento, P. A. & Sullivan, C. S. (2015). Identification of a polyomavirus microRNA highly expressed in tumors. Virology 476, 43-53. [PubMed]
Chen, C. J., Cox, J. E., Kincaid, R. P., Martinez, A. & Sullivan, C. S. (2013). Divergent MicroRNA targetomes of closely related circulating strains of a polyomavirus. J Virol 87, 11135-11147. [PubMed]
Church, M. E., Dela Cruz, F. N., Jr., Estrada, M., Leutenegger, C. M., Pesavento, P. A. & Woolard, K. D. (2016). Exposure to raccoon polyomavirus (RacPyV) in free-ranging North American raccoons (Procyon lotor). Virology 489, 292-299. [PubMed]
Daniels, R., Sadowicz, D. & Hebert, D. N. (2007). A very late viral protein triggers the lytic release of SV40. PLoS Pathog 3, e98. [PubMed]
Dawe, C. J., Freund, R., Mandel, G., Ballmer-Hofer, K., Talmage, D. A. & Benjamin, T. L. (1987). Variations in polyoma virus genotype in relation to tumor induction in mice. Characterization of wild type strains with widely differing tumor profiles. Am J Pathol 127, 243-261. [PubMed]
Deb, A., Foldenauer, U., Borjal, R. J., Streich, W. J., Luken, C., Johne, R., Muller, H. & Hammer, S. (2010). A longitudinal study on avian polyomavirus-specific antibodies in captive Spix's macaws (Cyanopsitta spixii). J Avian Med Surg 24, 192-198. [PubMed]
DeCaprio, J. A. & Garcea, R. L. (2013). A cornucopia of human polyomaviruses. Nat Rev Microbiol 11, 264-276. [PubMed]
Dela Cruz, F. N., Jr., Giannitti, F., Li, L., Woods, L. W., Del Valle, L., Delwart, E. & Pesavento, P. A. (2013). Novel polyomavirus associated with brain tumors in free-ranging raccoons, western United States. Emerg Infect Dis 19, 77-84. [PubMed]
Demengeot, J., Jacquemier, J., Torrente, M., Blangy, D. & Berebbi, M. (1990). Pattern of polyomavirus replication from infection until tumor formation in the organs of athymic nu/nu mice. J Virol 64, 5633-5639. [PubMed]
Dubensky, T. W., Murphy, F. A. & Villarreal, L. P. (1984). Detection of DNA and RNA virus genomes in organ systems of whole mice: patterns of mouse organ infection by polyomavirus. J Virol 50, 779-783. [PubMed]
Dykstra, M. J., Dykstra, C. C., Lukert, P. D. & Bozeman, L. H. (1984). Investigations of budgerigar fledgling disease virus. Am J Vet Res 45, 1883-1887. [PubMed]
Ehlers, B., A. E. Anoh, N. Ben Salem, S. Broll, E. Couacy-Hymann, D. Fischer, A. Gedvilaite, N. Ingenhütt, S. Liebmann, M. Martin, A. Mossoun, L. Mugisha, J. J. Muyembe-Tamfum, M. Pauly, B. Pérez de Val, H. Preugschas, D. Richter, G. Schubert, C. A. Szentiks, T. Teichmann, C. Walter, R. G. Ulrich, L. Wiersma, F. H. Leendertz and S. Calvignac-Spencer (2019). Novel polyomaviruses in mammals from multiple orders and reassessment of polyomavirus evolution and taxonomy. Viruses 11: 930.[PubMed]
Ehlers, B. & Moens, U. (2014). Genome analysis of non-human primate polyomaviruses. Infect, Genet Evol 26, 283-294. [PubMed]
Fang, C. Y., Lin, P. Y., Ou, W. C., Chen, P. L., Shen, C. H., Chang, D. & Wang, M. (2012). Analysis of the size of DNA packaged by the human JC virus-like particle. J Virol Methods 182, 87-92. [PubMed]
Feng, H., Shuda, M., Chang, Y. & Moore, P. S. (2008). Clonal integration of a polyomavirus in human Merkel cell carcinoma. Science 319, 1096-1100. [PubMed]
Gedvilaite A, Tryland M, Ulrich RG, Schneider J, Kurmauskaite V, Moens U, Preugschas H, Calvignac-Spencer S, Ehlers B. Novel polyomaviruses in shrews (Soricidae) with close similarity to human polyomavirus 12. J Gen Virol. 2017. Epub 2017/11/03. doi: 10.1099/jgv.0.000948. [PubMed].
Gosert, R., Kardas, P., Major, E. O. & Hirsch, H. H. (2010). Rearranged JC virus noncoding control regions found in progressive multifocal leukoencephalopathy patient samples increase virus early gene expression and replication rate. J Virol 84, 10448-10456. [PubMed]
Gosert, R., Rinaldo, C. H., Funk, G. A., Egli, A., Ramos, E., Drachenberg, C. B. & Hirsch, H. H. (2008). Polyomavirus BK with rearranged noncoding control region emerge in vivo in renal transplant patients and increase viral replication and cytopathology. J Exp Med 205, 841-852. [PubMed]
Gossai, A., Waterboer, T., Nelson, H. H., Michel, A., Willhauck-Fleckenstein, M., Farzan, S. F., Hoen, A. G., Christensen, B. C., Kelsey, K. T., Marsit, C. J., Pawlita, M. & Karagas, M. R. (2016). Seroepidemiology of Human Polyomaviruses in a US Population. Am J Epidemiol 183, 61-69. [PubMed]
Herrera, I., Khan, S. R., Kaleta, E. F., Muller, H., Dolz, G. & Neumann, U. (2001). Serological status for Chlamydophila psittaci, Newcastle disease virus, avian polyoma virus, and Pacheco disease virus in scarlet macaws (Ara macao) kept in captivity in Costa Rica. J Vet Med, Series B 48, 721-726. [PubMed]
Hurdiss, D. L., Morgan, E. L., Thompson, R. F., Prescott, E. L., Panou, M. M., Macdonald, A. & Ranson, N. A. (2016). New Structural Insights into the Genome and Minor Capsid Proteins of BK Polyomavirus using Cryo-Electron Microscopy. Structure 24, 528-536. [PubMed]
Imperiale, M. J. & Major, E. O. (2013). Polyomaviruses. In Fields Virology, 6th edn, pp. 1633-1661. Edited by D. M. Knipe & P. M. Howley. Philadelphia, PA, USA: Wolter Kluwer/Lippincott Williams & Williams.
Johne, R., Buck, C. B., Allander, T., Atwood, W. J., Garcea, R. L., Imperiale, M. J., Major, E. O., Ramqvist, T. & Norkin, L. C. (2011). Taxonomical developments in the family Polyomaviridae. Arch Virol 156, 1627-1634. [PubMed]
Johne, R. & Muller, H. (2007). Polyomaviruses of birds: etiologic agents of inflammatory diseases in a tumor virus family. J Virol 81, 11554-11559. [PubMed]
Kazem, S., Lauber, C., van der Meijden, E., Kooijman, S., Kravchenko, A. A., Feltkamp, M. C. & Gorbalenya, A. E. (2016). Limited variation during circulation of a polyomavirus in the human population involves the COCO-VA toggling site of Middle and Alternative T-antigen(s). Virology 487, 129-140. [PubMed]
Kazem, S., van der Meijden, E., Kooijman, S., Rosenberg, A. S., Hughey, L. C., Browning, J. C., Sadler, G., Busam, K., Pope, E., Benoit, T., Fleckman, P., de Vries, E., Eekhof, J. A. & Feltkamp, M. C. (2012). Trichodysplasia spinulosa is characterized by active polyomavirus infection. J Clin Virol 53, 225-230. [PubMed]
Kean, J. M., Rao, S., Wang, M. & Garcea, R. L. (2009). Seroepidemiology of human polyomaviruses. PLoS Pathog 5, e1000363. [PubMed]
Khan, M. S., Johne, R., Beck, I., Pawlita, M., Kaleta, E. F. & Muller, H. (2000). Development of a blocking enzyme-linked immunosorbent assay for the detection of avian polyomavirus-specific antibodies. J Virol Methods 89, 39-48. [PubMed]
Krauzewicz, N., Streuli, C. H., Stuart-Smith, N., Jones, M. D., Wallace, S. & Griffin, B. E. (1990). Myristylated polyomavirus VP2: role in the life cycle of the virus. J Virol 64, 4414-4420. [PubMed]
Krumbholz, A., Bininda-Emonds, O. R., Wutzler, P. & Zell, R. (2009). Phylogenetics, evolution, and medical importance of polyomaviruses. Infect, Genet Evol 9, 784-799. [PubMed]
Lauber, C., Kazem, S., Kravchenko, A. A., Feltkamp, M. C. & Gorbalenya, A. E. (2015). Interspecific adaptation by binary choice at de novo polyomavirus T antigen site through accelerated codon-constrained Val-Ala toggling within an intrinsically disordered region. Nucleic Acids Res 43, 4800-4813. [PubMed]
Lednicky, J. A., Butel, J. S., Luetke, M. C. & Loeb, J. C. (2014). Complete genomic sequence of a new Human polyomavirus 9 strain with an altered noncoding control region. Virus Genes 49, 490-492. [PubMed]
Lee, S., Paulson, K. G., Murchison, E. P., Afanasiev, O. K., Alkan, C., Leonard, J. H., Byrd, D. R., Hannon, G. J. & Nghiem, P. (2011). Identification and validation of a novel mature microRNA encoded by the Merkel cell polyomavirus in human Merkel cell carcinomas. J Clin Virol 52, 272-275. [PubMed]
Lehn, H. & Muller, H. (1986). Cloning and characterization of budgerigar fledgling disease virus, an avian polyomavirus. Virology 151, 362-370. [PubMed]
Lim, E. S., Reyes, A., Antonio, M., Saha, D., Ikumapayi, U. N., Adeyemi, M., Stine, O. C., Skelton, R., Brennan, D. C., Mkakosya, R. S., Manary, M. J., Gordon, J. I. & Wang, D. (2013). Discovery of STL polyomavirus, a polyomavirus of ancestral recombinant origin that encodes a unique T antigen by alternative splicing. Virology 436, 295-303. [PubMed]
Liu, W., Yang, R., Payne, A. S., Schowalter, R. M., Spurgeon, M. E., Lambert, P. F., Xu, X., Buck, C. B. & You, J. (2016). Identifying the Target Cells and Mechanisms of Merkel Cell Polyomavirus Infection. Cell Host Microbe 19, 775-787. [PubMed]
Madinda, N. F., Ehlers, B., Wertheim, J. O., Akoua-Koffi, C., Bergl, R. A., Boesch, C., Boji Mungu Akonkwa, D., Eckardt, W., Fruth, B., Gillespie, T. R., Gray, M., Hohmann, G., Karhemere, S., Kujirakwinja, D., Langergraber, K., Muyembe, J. J., Nishuli, R., Pauly, M., Petrzelkova, K. J., Robbins, M. M., Todd, A., Schubert, G., Stoinski, T. S., Wittig, R. M., Zuberbuhler, K., Peeters, M., Leendertz, F. H. & Calvignac-Spencer, S. (2016). Assessing host-virus co-divergence for close relatives of Merkel cell polyomavirus infecting African great apes. J Virol. [PubMed]
Mannova, P., Liebl, D., Krauzewicz, N., Fejtova, A., Stokrova, J., Palkova, Z., Griffin, B. E. & Forstova, J. (2002). Analysis of mouse polyomavirus mutants with lesions in the minor capsid proteins. J Gen Virol 83, 2309-2319. [PubMed]
Mizutani, T., Sayama, Y., Nakanishi, A., Ochiai, H., Sakai, K., Wakabayashi, K., Tanaka, N., Miura, E., Oba, M., Kurane, I., Saijo, M., Morikawa, S. & Ono, S. (2011). Novel DNA virus isolated from samples showing endothelial cell necrosis in the Japanese eel, Anguilla japonica. Virology 412, 179-187. [PubMed]
Norkiene, M., Stonyte, J., Ziogiene, D., Mazeike, E., Sasnauskas, K. & Gedvilaite, A. (2015). Production of recombinant VP1-derived virus-like particles from novel human polyomaviruses in yeast. BMC Biotechnol 15, 68. [PubMed]
O'Hara, S. D., Stehle, T. & Garcea, R. (2014). Glycan receptors of the Polyomaviridae: structure, function, and pathogenesis. Curr Opin Virol 7, 73-78. [PubMed]
Pastrana, D. V., Brennan, D. C., Cuburu, N., Storch, G. A., Viscidi, R. P., Randhawa, P. S. & Buck, C. B. (2012). Neutralization serotyping of BK polyomavirus infection in kidney transplant recipients. PLoS Pathog 8, e1002650. [PubMed]
Phalen, D. N., Radabaugh, C. S., Dahlhausen, R. D. & Styles, D. K. (2000). Viremia, virus shedding, and antibody response during natural avian polyomavirus infection in parrots. J Am Vet Med Assoc 217, 32-36. [PubMed]
Phalen, D. N., Wilson, V. G. & Graham, D. L. (1993). Organ distribution of avian polyomavirus DNA and virus-neutralizing antibody titers in healthy adult budgerigars. Am J Vet Res 54, 2040-2047. [PubMed]
Qi, F., Carbone, M., Yang, H. & Gaudino, G. (2011). Simian virus 40 transformation, malignant mesothelioma and brain tumors. Expert Rev Respir Med 5, 683-697. [PubMed]
Raidal, S. R., Cross, G. M., Tomaszewski, E., Graham, D. L. & Phalen, D. N. (1998). A serologic survey for avian polyomavirus and Pacheco's disease virus in Australian cockatoos. Avian Pathol 27, 263-268. [PubMed]
Sahli, R., Freund, R., Dubensky, T., Garcea, R., Bronson, R. & Benjamin, T. (1993). Defect in entry and altered pathogenicity of a polyoma virus mutant blocked in VP2 myristylation. Virology 192, 142-153. [PubMed]
Saribas, A. S., Coric, P., Hamazaspyan, A., Davis, W., Axman, R., White, M. K., Abou-Gharbia, M., Childers, W., Condra, J. H., Bouaziz, S. & Safak, M. (2016). Emerging From the Unknown: Structural and Functional Features of Agnoprotein of Polyomaviruses. J Cell Physiol 231, 2115-2127. [PubMed]
Schowalter, R. M., Pastrana, D. V., Pumphrey, K. A., Moyer, A. L. & Buck, C. B. (2010). Merkel cell polyomavirus and two previously unknown polyomaviruses are chronically shed from human skin. Cell Host Microbe 7, 509-515. [PubMed]
Scuda, N., Madinda, N. F., Akoua-Koffi, C., Adjogoua, E. V., Wevers, D., Hofmann, J., Cameron, K. N., Leendertz, S. A., Couacy-Hymann, E., Robbins, M., Boesch, C., Jarvis, M. A., Moens, U., Mugisha, L., Calvignac-Spencer, S., Leendertz, F. H. & Ehlers, B. (2013). Novel polyomaviruses of nonhuman primates: genetic and serological predictors for the existence of multiple unknown polyomaviruses within the human population. PLoS Pathog 9, e1003429. [PubMed]
Shen, P. S., Enderlein, D., Nelson, C. D., Carter, W. S., Kawano, M., Xing, L., Swenson, R. D., Olson, N. H., Baker, T. S., Cheng, R. H., Atwood, W. J., Johne, R. & Belnap, D. M. (2011). The structure of avian polyomavirus reveals variably sized capsids, non-conserved inter-capsomere interactions, and a possible location of the minor capsid protein VP4. Virology 411, 142-152. [PubMed]
Song, X., Van Ghelue, M., Ludvigsen, M., Nordbo, S. A., Ehlers, B. & Moens, U. (2016). Characterization of the non-coding control region of polyomavirus KI isolated from nasopharyngeal samples from patients with respiratory symptoms or infection and from blood from healthy blood donors in Norway. J Gen Virol 97, 1647-1657. [PubMed]
Stehle, T., Gamblin, S. J., Yan, Y. & Harrison, S. C. (1996). The structure of simian virus 40 refined at 3.1 Å resolution. Structure 4, 165-182. [PubMed]
Stehle, T. & Harrison, S. C. (1996). Crystal structures of murine polyomavirus in complex with straight-chain and branched-chain sialyloligosaccharide receptor fragments. Structure 4, 183-194. [PubMed]
Streuli, C. H. & Griffin, B. E. (1987). Myristic acid is coupled to a structural protein of polyoma virus and SV40. Nature 326, 619-622. [PubMed]
Stroh, L. J., Gee, G. V., Blaum, B. S., Dugan, A. S., Feltkamp, M. C., Atwood, W. J. & Stehle, T. (2015). Trichodysplasia spinulosa-Associated Polyomavirus Uses a Displaced Binding Site on VP1 to Engage Sialylated Glycolipids. PLoS Pathog 11, e1005112. [PubMed]
Stroh, L. J., Neu, U., Blaum, B. S., Buch, M. H., Garcea, R. L. & Stehle, T. (2014). Structure analysis of the major capsid proteins of human polyomaviruses 6 and 7 reveals an obstructed sialic acid binding site. J Virol 88, 10831-10839. [PubMed]
Sullivan, C. S., Sung, C. K., Pack, C. D., Grundhoff, A., Lukacher, A. E., Benjamin, T. L. & Ganem, D. (2009). Murine Polyomavirus encodes a microRNA that cleaves early RNA transcripts but is not essential for experimental infection. Virology 387, 157-167. [PubMed]
Tao, Y., Shi, M., Conrardy, C., Kuzmin, I. V., Recuenco, S., Agwanda, B., Alvarez, D. A., Ellison, J. A., Gilbert, A. T., Moran, D., Niezgoda, M., Lindblade, K. A., Holmes, E. C., Breiman, R. F., Rupprecht, C. E. & Tong, S. (2013). Discovery of diverse polyomaviruses in bats and the evolutionary history of the Polyomaviridae. J Gen Virol 94, 738-748. [PubMed]
Toptan, T., Yousem, S. A., Ho, J., Matsushima, Y., Stabile, L. P., Fernandez-Figueras, M. T., Bhargava, R., Ryo, A., Moore, P. S. & Chang, Y. (2016). Survey for human polyomaviruses in cancer. JCI Insight 1 (2). [PubMed]
van der Meijden, E., Janssens, R. W., Lauber, C., Bouwes Bavinck, J. N., Gorbalenya, A. E. & Feltkamp, M. C. (2010). Discovery of a new human polyomavirus associated with trichodysplasia spinulosa in an immunocompromized patient. PLoS Pathog 6, e1001024. [PubMed]
van der Meijden, E., Kazem, S., Dargel, C. A., van Vuren, N., Hensbergen, P. J. & Feltkamp, M. C. (2015). Characterization of T Antigens, Including Middle T and Alternative T, Expressed by the Human Polyomavirus Associated with Trichodysplasia Spinulosa. J Virol 89, 9427-9439. [PubMed]
Verschoor, E. J., Niphuis, H., Fagrouch, Z., Christian, P., Sasnauskas, K., Pizarro, M. C. & Heeney, J. L. (2008). Seroprevalence of SV40-like polyomavirus infections in captive and free-ranging macaque species. J Med Primatol 37, 196-201. [PubMed]
Wainright, P. O., Lukert, P. D., Davis, R. B. & Villegas, P. (1987). Serological evaluation of some psittaciformes for budgerigar fledgling disease virus. Avian Dis 31, 673-676. [PubMed]
Wiley, S. R., Kraus, R. J., Zuo, F., Murray, E. E., Loritz, K. & Mertz, J. E. (1993). SV40 early-to-late switch involves titration of cellular transcriptional repressors. Genes Dev 7, 2206-2219. [PubMed]
Woolford, L., O'Hara, A. J., Bennett, M. D., Slaven, M., Swan, R., Friend, J. A., Ducki, A., Sims, C., Hill, S., Nicholls, P. K. & Warren, K. S. (2008). Cutaneous papillomatosis and carcinomatosis in the Western barred bandicoot (Perameles bougainville). Vet Pathol 45, 95-103. [PubMed]
Zielonka, A., Gedvilaite, A., Ulrich, R., Luschow, D., Sasnauskas, K., Muller, H. & Johne, R. (2006). Generation of virus-like particles consisting of the major capsid protein VP1 of goose hemorrhagic polyomavirus and their application in serological tests. Virus Res 120, 128-137. [PubMed]
Zielonka, A., Verschoor, E. J., Gedvilaite, A., Roesler, U., Muller, H. & Johne, R. (2011). Detection of chimpanzee polyomavirus-specific antibodies in captive and wild-caught chimpanzees using yeast-expressed virus-like particles. Virus Res 155, 514-519. [PubMed]